From: Marc Hoeppner <marc.hoeppner@...>
Date: 2007-07-12T18:48:00+09:00
Subject: Re: Stripping columns / puts'ing columns

Robert Klemme wrote:
> 2007/7/12, Marc Hoeppner <marc.hoeppner@molbio.su.se>:
>>
>> other day only to find out that it can be done with grep...yuck).
> I'm missing one crucial bit of information: can your files grow so
> large that they do not fit into memory?  If that's the case you need a
> two or more phased approach.
> 
> Kind regards
> 
> robert

I am using single protein alignments, so that any single row should 
never exceed   ~ 2000 characters (or in other word my sequences are 
rarely longer than a couple hundred characters), with 20 rows tops. So 
that should not be an issue, I guess.

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